Genbank

A module for parsing and generating NCBI’s TBL annotation format.

gfftk.genbank.dict2tbl(genesDict, scaff2genes, scaffLen, SeqCenter, SeqRefNum, skipList, output=False, annotations=False, external=False)

function to take funannotate annotation dictionaries and convert to NCBI tbl output

gfftk.genbank.tbl2dict(inputfile, fasta, annotation=False, table=1, debug=False)

need a method to convert directly from NCBI tbl format to several output formats to avoid conversion problems with GBK files that have mutliple transcripts if can load funannotate dictionary directly from tbl format, then can write the other formats directly